Fidelity of WRF model in simulating heat wave events over India.

The evaluation of Weather Research and Forecasting (WRF) model has been performed for simulating episodic Heat Wave (HW) events of 2015 and 2016 with varied horizontal resolutions of 27 km for the entire India (d01), 9 km for the North West (NW (d02)) and South East (SE (d03)) domain. Study compares the maximum temperature (Tmax) simulated by WRF model, using six different combination of parameterization schemes, with observations from the India Meteorological Department (IMD) during the HW events. Among the six experiments, Exp2 (i.e., combination of WSM6 microphysics (MP) together with radiation parameterization CAM, Yonsei (PBL), NOAH land surface and Grell-3D convective schemes) is found closest to the observations in reproducing the temperature. The model exhibits an uncertainty of ± 2 °C in maximum temperature (Tmax) for both the regions, suggesting regional temperature is influenced by the location and complex orography. Overall, statistical results reveal that the best performance is achieved with Exp2. Further, to understand the dynamics of rising HW intensity, two case studies of HW days along with influencing parameters like Tmax, RH and prevailing wind distribution have been simulated. Model simulated Tmax during 2015 reaches up to 44 °C in NW and SE part of India. In 2016, HW is more prevailing towards NW, while in SE region Tmax reaches upto 34-38 °C with high RH (60-85%). The comparative research made it abundantly evident that these episodic events are unique in terms of duration and geographical spread which can be used to assess the WRF performance for future projections of HW.

Genome-wide binding sites of Plasmodium falciparum mini chromosome maintenance protein MCM6 show new insights into parasite DNA replication.

Multiple rounds of DNA replication take place in various stages of the life cycle in the human malaria parasite Plasmodium falciparum. Previous bioinformatics analysis has shown the presence of putative Autonomously Replicating Sequence (ARS) like sequences in the Plasmodium genome. However, the actual sites and frequency of replication origins in the P. falciparum genome based on experimental data still remain elusive. Minichromosome maintenance (MCM) proteins are recruited by the Origin recognition complex (ORC) to the origins of replication in eukaryotes including P. falciparum. We used PfMCM6 for chromatin immunoprecipitation followed by sequencing (ChIP-seq) in the quest for identification of putative replication origins in the parasite. PfMCM6 DNA binding sites annotation revealed high enrichment at exon regions. This is contrary to higher eukaryotes that show an inclination of origin sites towards transcriptional start sites. ChIP-seq results were further validated by ChIP-qPCR results as well as nascent strand abundance assay at the selected PfMCM6 enriched sites that also showed preferential binding of PfORC1 suggesting potential of these sites as origin sites. Further, PfMCM6 ChIP-seq data showed a positive correlation with previously published histone H4K8Ac genome-wide binding sites but not with H3K9Ac sites suggesting epigenetic control of replication initiation sites in the parasites. Overall, our data show the genome-wide distribution of PfMCM6 binding sites with their potential as replication origins in this deadly human pathogen that not only broadens our knowledge of parasite DNA replication and its unique biology, it may help to find new avenues for intervention processes.

Phylogeny and evolution of SARS-CoV-2 during Delta and Omicron variant waves in India.

SARS-CoV-2 evolution has continued to generate variants, responsible for new pandemic waves locally and globally. Varying disease presentation and severity has been ascribed to inherent variant characteristics and vaccine immunity. This study analyzed genomic data from 305 whole genome sequences from SARS-CoV-2 patients before and through the third wave in India. Delta variant was reported in patients without comorbidity (97%), while Omicron BA.2 was reported in patients with comorbidity (77%). Tissue adaptation studies brought forth higher propensity of Omicron variants to bronchial tissue than lung, contrary to observation in Delta variants from Delhi. Study of codon usage pattern distinguished the prevalent variants, clustering them separately, Omicron BA.2 isolated in February grouped away from December strains, and all BA.2 after December acquired a new mutation S959P in ORF1b (44.3% of BA.2 in the study) indicating ongoing evolution. Loss of critical spike mutations in Omicron BA.2 and gain of immune evasion mutations including G142D, reported in Delta but absent in BA.1, and S371F instead of S371L in BA.1 could explain very brief period of BA.1 in December 2021, followed by complete replacement by BA.2. Higher propensity of Omicron variants to bronchial tissue, probably ensured increased transmission while Omicron BA.2 became the prevalent variant possibly due to evolutionary trade-off. Virus evolution continues to shape the epidemic and its culmination.Communicated by Ramaswamy H. Sarma.

An evaluation of long-term gridded datasets of total columnar ozone retrieved from MERRA-2 and AIRS over the Indian region.

Accurately determining the spatiotemporal variability of ozone on a regional to intercontinental scale is essential for air quality studies. In the present study, a first systematic evaluation and analysis of long-term (2009-2020) gridded datasets (0.5° × 0.625°) of total columnar ozone (TCO) retrieved from Modern-Era Retrospective Analysis for Research and Applications, version 2 (MERRA-2TCO) is evaluated for the Indian region. The MERRA-2TCO is first validated with observations (IMDTCO) and then further compared with the Atmospheric Infrared Sounder (AIRSTCO) satellite datasets. For an in-depth comparison and statistical analysis, the dataset has been segregated into seven distinct regions, i.e., Western Himalaya (WH), North East (NE), North Central (NC), North West (NW), West Peninsula India (WPI), East Peninsula India (EPI), and South Peninsula India (SPI). Descriptive statistics (NMSE, FB, R, FA2, and d) reveals a significant correlation of MERRA-2TCO against IMDTCO for Delhi with NMSE (0.0013), FB (- 0.029) and Varanasi NMSE (0.0008), FB (- 0.014). The results of simple linear regression analysis show an increasing TCO trend value of 0.31% and 0.44% per decade in both the cities, respectively. A comparison of MERRA-2TCO with AIRSTCO shows a significant correlation of 0.62-0.87 in different regions of India. Furthermore, in support of Brewer's circulation pattern, an increasing shift of columnar ozone from low (SPI) to high (WH) latitudinal regions is observed. Our results show that the MERRA-2 ozone dataset can be effectively used for ozone air quality studies over India and this analysis may strengthen the need for independent, high-quality, and consistent ozone measurements with small uncertainties.

An analysis of particulate pollution using urban aerosol pollution island intensity over Delhi, India.

The accent of the present study is determination of Urban Aerosol Pollution Island (UAPI) intensity and spatial variability in particulate matter concentration (PM10 and PM2.5) over Delhi. For analysis, the hourly concentration dataset of PM2.5 and PM10 from January 2019 to December 2020 was obtained from ten air quality monitoring stations of Delhi. Additionally, UAPI Index has been calculated to assess the intensity of particulate pollution. The daily, monthly, and annual variations in the trends of PM10, PM2.5, and UAPI index along with related meteorological parameters have been analyzed. Particulate pollution peaked majorly during two seasons, i.e., summer and winter. The highest concentration of PM10 was observed to be 426.77 µg/m3 while that of PM2.5 was observed to be 301.91 µg/m3 in January 2019 for traffic-affected regions. During winters, higher PM2.5 concentration was observed which can be ascribed to increased local emissions and enhanced secondary particle formations. While the increase in PM10 concentrations led to an increment in pollution episodes during summers over most of the sites in Delhi. The UAPI index was found to be declining in 2020 over traffic affected regions (77.92 and 27.22 for 2019 and 2020, respectively) as well as in the background regions (64.91 and 19.80 for 2019 and 2020, respectively) of Delhi. Low traffic intensity and reduced pollutant emission could have been responsible for the reduction of UAPI intensity in the year 2020. The result indicates that lockdown implemented to control the COVID-19 outbreak led to an unexpected decrease in the PM10 pollution over Delhi.

Antibacterial activity and mechanism of essential oils in combination with medium-chain fatty acids against predominant bovine mastitis pathogens.

Bovine mastitis has become a significant economic importance for the dairy industry. Concerns regarding poor milk quality and emergence of bacterial resistance have necessitated to develop an alternative therapeutic approach to antibiotics for the treatment of mastitis. Saturated medium-chain fatty acids (MCFAs) and essential oils (EOs) are known natural antimicrobials, but their combined effect has not been investigated extensively. The objective of the present investigation was to examine the bactericidal effect of various combined treatments of eight EOs and three saturated MCFAs to inactivate predominant mastitis pathogens, including Staphylococcus aureus ATCC 29213; Escherichia coli ATCC 25922; Klebsiella pneumoniae ATCC 27736 and Streptococcus agalactiae ATCC 27956. The minimum inhibitory concentration (MIC) values confirmed that all the tested pathogens were variably susceptible to both EOs and saturated MCFAs. Among essential oils, carvacrol (CAR), trans-cinnamaldehyde (TC) and thymol (TM) showed the highest inhibitory activity at concentration 0·38-1·32 mg/mL. Carvacrol exhibited effective additive antibacterial activity in combined treatment with octanoic acid (OA) in terms of its fractional inhibitory index (0·63-0·88) and time-kill effect in reducing about 6 log CFU/mL bacterial cells in less than 5 min. The effort was also made to elucidate the mechanism of antibacterial action of CAR and OA against selected mastitis pathogens by observing changes in cell microstructure, permeability and integrity of cell membrane and their membrane potential. After adding CAR and OA at MIC level, there were obvious changes in cell morphology, leakage of small electrolytes and macromolecules at the initial few hours of treatment i.e. within 1-2 h were observed. Our results indicated that CAR and OA could be evaluated as alternatives or adjuncts to antibiotics as intramammary infusion or topical application to treat bovine mastitis, significantly improving the microbiological safety of milk.

An evaluation of inter and intra population structure of Uttar Pradesh, inferred from 24 autosomal STRs.

AIM: The present study was designed to explore the STR diversity and genomic history of the inhabitants of the most populous subdivision of the country. A set of 24 hypervariable autosomal STRs was used to estimate the genetic diversity within the studied population. A panel of 15 autosomal STRs, which is most common in the previously reported data sets, was used to estimate the genetic diversity between the studied population, and obtained unique relations were reported here. METHOD: The genetic diversity and polymorphism among 636 individuals of different ethnic groups, residing in Bareilly, Pilibhit, Shahjahanpur, Gorakhpur, Jhansi, and Varanasi regions of Uttar Pradesh, India, was investigated. This investigation was carried out via 24 autosomal STRs. RESULT: The 24 loci studied showed the highest value of combined power of discrimination (CPD = 1), combined power of exclusion (CPE = 0.99999999985), combined paternity index (CPI = 6.10 × 109) and lowest combined matching probability (CPM = 7.90 × 10-31). CONCLUSION: The studied population showed genetic closeness with the population of Uttarakhand, the Jats of Delhi,the Jat Sikh (Punjab), and the population of Rajasthan. Among the tested loci, SE33 and Penta E were found to be most useful in terms of the highest discrimination power, lowest matching probability, the highest power of exclusion, and highest polymorphism information content for the Uttar Pradesh population .

Impact of oral cadmium intoxication on levels of different essential trace elements and oxidative stress measures in mice: a response to dose.

The study evaluated the effect of oral intoxication of cadmium and the possible causes of oxidative stress and its preferential accumulation in different organs as well as sub-sequential effects in mice. Twenty-four Swiss albino male mice were divided into three groups viz., normal control group without cadmium chloride (CdCl2), whereas a daily dose of 0.5 and 1.2 mg of CdCl2 was orally administered for a period of a week to dose group 1 (DG-1) and dose group 2 (DG-2), respectively. A significant increase in the severity of cadmium toxicity was observed in animals as evidenced by aggravation in liver enzymes viz., serum alanine aminotransferase and aspartate transaminase, whereas lower levels of antioxidative stress markers in liver and kidney tissues of treated mice were observed as compared to normal control group. A significant depletion of calcium levels in liver tissues of DG-1 (217.36 ± 1.73 µg/g of wet tissues) and DG-2 (186.41 ± 1.56 µg/g of wet tissues) groups, along with Cd accumulation, was observed. To summarize, the current study would increase our understanding with respect to dose-dependent absorption of Cd and its toxicity led to mortality as well as adverse health effects in the body of mice. Graphical abstract ᅟ.

Intercomparison of Aerosol Optical Thickness Derived from MODIS and in Situ Ground Datasets over Jaipur, a Semi-arid Zone in India.

The first detailed seasonal validation has been carried out for the Moderate Resolution Imaging Spectroradiometer (MODIS) Terra and Aqua satellites Level 2.0 Collection Version 5.1 AOT (τMODIS) with Aerosol Robotic Network (AERONET) Level 2.0 AOT (τAERONET) for the years 2009-2012 over semi-arid region Jaipur, northwestern India. The correlation between τMODIS versus τAERONET at 550 nm is determined with different spatial and temporal size windows. The τMODIS overestimates τAERONET within a range of +0.06 ± 0.24 during the pre-monsoon (April-June) season, while it underestimates the τAERONET with -0.04 ± 0.12 and -0.05 ± 0.18 during dry (December-March) and post-monsoon (October-November) seasons, respectively. Correlation without (with) error envelope has been found for pre-monsoon at 0.71 (0.89), post-monsoon at 0.76 (0.94), and dry season at 0.78 (0.95). τMODIS is compared to τAERONET at three more ground AERONET stations in India, i.e., Kanpur, Gual Pahari, and Pune. Furthermore, the performance of MODIS Deep Blue and Aqua AOT550 nm (τDB550 nm and τAqua550 nm) with τAERONET is also evaluated for all considered sites over India along with a U.S. desert site at White Sand, Tularosa Basin, NM. The statistical results reveal that τAqua550 nm performs better over Kanpur and Pune, whereas τDB550 nm performs better over Jaipur, Gual Pahari, and White Sand High Energy Laser Systems Test Facility (HELSTF) (U.S. site).

Knowledge of risk factors and early detection methods and practices towards breast cancer among nurses in Indira Gandhi Medical College, Shimla, Himachal Pradesh, India.

BACKGROUND: Breast cancer is an increasing health problem in India. Screening for early detection should lead to a reduction in mortality from the disease. It is known that motivation by nurses influences uptake of screening methods by women. This study aimed to investigate knowledge of breast cancer risk factors and early detection methods and the practice of screening among nurses in Indira Gandhi Medical College, Shimla, Himachal Pradesh. MATERIALS AND METHODS: A cross-sectional study was conducted using a self-administered questionnaire to assess the knowledge of breast cancer risk factors, early detection methods and practice of screening methods among 457 nurses working in an Indira Gandhi Medical College, Shimla-H.P. Chi square test, Data was analysed using SPSS version 16. Test of significance used was chi square test. RESULTS: The response rate of the study was 94.9%. The average knowledge of risk factors about breast cancer of the entire population is 49%. 10.5% of nurses had poor knowledge, 25.2% of the nurses had good knowledge, 45% had very good knowledge and 16.3% of the nurses had excellent knowledge about risk factors of breast cancer and early detection methods. The knowledge level was significantly higher among BSC nurses than nurses with Diploma. 54% of participants in this study reportedly practice BSE at least once every year. Less than one-third reported that they had CBE within the past one year. 7% ever had mammogram before this study. CONCLUSIONS: Results from this study suggest the frequent continuing medical education programmes on breast cancer at institutional level is desirable.

Dust events and their influence on aerosol optical properties over Jaipur in Northwestern India.

In this study, we systematically document the link between dust episodes and local scale regional aerosol optical properties over Jaipur located in the vicinity of Thar Desert in the northwestern state of Rajasthan. The seasonal variation of AOT(500 nm) (aerosol optical thickness) shows high values (0.51 ± 0.18) during pre-monsoon (dust dominant) season while low values (0.36 ± 0.14) are exhibited during winter. The Ångström wavelength exponent has been found to exhibit low value (<0.25) indicating relative dominance of coarse-mode particles during pre-monsoon season. The AOT increased from 0.36 (Aprilmean) to 0.575 (May-June(mean)). Consequently, volume concentration range increases from April through May-June followed by a sharp decline in July during the first active phase of the monsoon. Significantly high dust storms were observed over Jaipur as indicated by high values of single scattering albedo (SSA(440 nm) = 0.89, SSA(675 nm) = 0.95, SSA870 nm = 0.97, SSA(1,020 nm) = 0.976) than the previously reported values over IGP region sites. The larger SSA values (more scattering aerosol), especially at longer wavelengths, is due to the abundant dust loading, and is attributed to the measurement site's proximity to the Thar Desert. The mean and standard deviation in SSA and asymmetry parameter during pre-monsoon season over Jaipur is 0.938 ± 0.023 and 0.712 ± 0.017 at 675 nm wavelength, respectively. Back-trajectory air mass simulations suggest Thar Desert in northwestern India as the primary source of high aerosols dust loading over Jaipur region as well as contribution by long-range transport from the Arabian Peninsula and Middle East gulf regions, during pre-monsoon season.

Loss of Insl3: a potential predisposing factor for testicular torsion.

PURPOSE: The testicular hormone Insl3 is critical for mouse gubernacular development. Knockout mice exhibit bilateral intra-abdominal cryptorchidism with absent gubernaculum. Prior studies described torsion of the vas deferens in Insl3 mutant mice. We performed a detailed anatomical analysis of the vas deferens and testis in Insl3 mutant mice to characterize associated anomalies further. MATERIALS AND METHODS: Insl3 wild-type (Insl3(+/+)), heterozygous (Insl3(+/-)) and knockout (Insl3(-/-)) male mice were examined either prepubertally (postnatal day 23) or in adulthood (postnatal day 90 or later). The macroscopic appearance, characteristics, and mobility of the testes and spermatic cord were recorded. RESULTS: We examined 56 prepubertal and 33 adult mice (175 testes, 28 [20:8] Insl3(+/+), 97 [60:37] Insl3(+/-), 50 [32:18] Insl3(-/-)). Unlike normal Insl3(+/+) testes, 94% of Insl3(-/-) testes were located intra-abdominally at all ages. Delayed descent occurred in Insl3((+/-)) testes, since 37% of postnatal day 23 and 8% of P90 or later testes were intra-abdominal. Vas elongation/convolution and spermatic cord twisting were noted in 65% of Insl3(-/-), 27% of Insl3((+/-)) and 0% of Insl3(+/+) testes. While all Insl3(+/+) testes were normal, 5% of Insl3((+/-)) and 32% of Insl3(-/-) testes showed significant testicular pathology, including torsion, atrophy and vanished testis, which statistically increased with age. CONCLUSIONS: Poorly formed gubernacula and increased testicular mobility in Insl3 mutant mice result in spermatic cord anomalies, delayed/absent testicular descent and subsequent testicular torsion in a gene dose dependent manner. Prepubertal testicular torsion in the mutant mice predisposes to testicular atrophy and vanishing testes in adulthood. Thus, Insl3 is a candidate signaling molecule in human delayed testicular descent and torsion.

Characterizing the long-range transport of black carbon aerosols during Transport and Chemical Evolution over the Pacific (TRACE-P) experiment.

A major aircraft experiment Transport and Chemical Evolution over the Pacific (TRACE-P) mission over the NW Pacific in March-April 2001 was conducted to better understand how outflow from the Asian continent affects the composition of the global atmosphere. In this paper, a global climate model, GEOS-Chem is used to investigate possible black carbon aerosol contributions from TRACE-P region. Our result depicts that absorbing black carbon ("soot") significantly outflow during lifting to the free troposphere through warm conveyor belt and convection associated with this lifting. The GEOS-Chem simulation results show significant transport of black carbon aerosols from Asian regions to the Western Pacific region during the spring season. As estimated by GEOS-Chem simulations, approximately 25% of the black carbon concentrations over the western pacific originate from SE Asia in the spring.

A grey zone approach for evaluation of 15 short tandem repeat loci in sibship analysis: a pilot study in Indian subjects.

The evaluation of 15 STR loci Applied Biosystems Identifiler kit for sibship determination in Indian subjects is reported. Cumulative sibship indices (CSIs) calculated following standard methods in sibling pairs and non-sibling pairs, showed mean values comparable to other reports. Mean CSI value in sibling group was higher than in corresponding non-sibling group. Moderately high value of CSI in one of the non-sibling pairs and a very low likelihood ratio favoring non-relatedness in a known sibling pair did not allow binary decision about sibship status. To deal with this problem a grey zone approach has been applied to sibship test. It is concluded that the 15 loci STR kit can be reliably used for inferring sibship between pairs of individuals by defining a grey zone of a sibship test as an area of likelihood ratio values where the discriminatory performance is insufficient.

Studies on the sorption of As(III) on the synthetic gel sodium potassium fluorophlogopite.

Sorption of As(III) has been studied on the synthesized gel close to Sodium potassium fluorophlogopite [Na0.5K0.5Mg3 (Si3 AlO10) F2] as a function of initial solution concentration at pH 2,4 and 7. The effect of parameters like equilibration time (0.5 - 24.0 hr), weight of the exchanger (30-150 mg) and temperature (25 degrees - 45 degrees c) has been investigated. The uptake of metal ion, As(III) has been expressed in terms of distribution coefficient i.e. (kd) values.